SCIENTIFIC PUBLICATIONS

2020 Publications from SOI-Supported Work:

Amon, D., Kennedy, B., Cantwell, K., Suhre, K., Glickson, D., Shank, T. and R. Rotjan. (2020). Deep-sea Debris in the Central and Western Pacific Ocean. Front. Mar. Sci. 7:369, doi: 10.3389/fmars.2020.00369.

Auscavitch, S., Deere, M., Keller, A., Rotjan, R., Shank, T., and E. Cordes. (2020). Oceanographic Drivers of Deep-sea Coral Species Distribution and Community Assembly on Seamounts, Islands, Atolls, and Reefs within the Phoenix Islands Protected Area. Fron. Mar. Sci., 7:42, doi: 10.3389/fmars.2020.00042.

Billings, G., and Johnson-Roberson, M. (2020). SilhoNet-Fisheye: Adaptation of a ROI Based Object Pose Estimation Network to Monocular Fisheye Images. IEEE Robotics and Automation Letters, 5(3), doi: 10.1109/LRA.2020.2994036.

Blum, J., Drazen, J., Johnson, M., Popp, B., Motta, L., and Jamieson, A. (2020). Mercury Isotopes Identify Near-surface Marine Mercury in Deep-sea Trench Biota. Proceedings of the National Academy of Sciences, 117(47) 29292-29298, doi: 10.1073/pnas.2012773117.

Borges de Sousa, J. (2020). Veículos Não Tripulados Para Observação do Oceano, Gazeta Fisica, 43(1).

Breusing, C., Johnson, S., Tunnicliffe, V., Clague, D., Vrijenhoek, R., and Beinart, R. (2020). Allopatric and Sympatric Drivers of Speciation in Alviniconcha Hydrothermal Vent Snails. Molecular Biology and Evolution, 37(12), 3469-3484, doi: 10.1093/molbev/msaa177.

Breusing, C., Mitchell, J., Delaney, J., Sylva, S., Seewald, J., Girguis, P. and Beinart, R. (2020). Physiological Dynamics of Chemosynthetic Symbionts in Hydrothermal Vent Snails. The ISME Journal, 14, 2568-2579, doi: 10.1038/s41396-020-0707-2.

Coudrier-Curveur, A., Karakas, C., Singh, S., Tapponnier, P., Carton, H., and Hananto, N. (2020). Is There a Nascent Plate Boundary in the Northern Italian Ocean? Geophysical Research Letters, 47(7), doi: 10.1029/2020GL087362.

Evans, N., Boles, E., Kwiecinksi, J., Mullen, S., Wolf, M., Devol, A., et. al. (2020). The Role of Water Masses in Shaping the Distribution of Redox Active Compounds in the Eastern Tropical North Pacific Oxygen Deficient Zone and Influencing Low Oxygen Concentrations in the Eastern Pacific Ocean. Limn. and Ocean., 65(8), doi: 10.1002/lno.11412.

Garcia, M., Tree, J., Wessel, P., and J. Smith. (2020). Puhahonu: Earth’s Biggest and Hottest Shield Volcano. J. Earth and Planetary Science Letters, 542, doi: 10.1016/j.epsl.2020.116296.

Gerringer, M., Yancey, P., Tikhonova, O., Vavilov, N., Zgoda, V., and D. Davydov. (2020). Pressure Tolerance of Deep-sea Enzymes can be Evolved through Increasing Volume Changes in Protein Transitions: A Study with Lactate Dehydrogenases from Abyssal and Hadal Fishes. FEBS Journal, 287: 5394-5410, doi: 10.1111/febs.15317.

German, C., Resing, J., Xu, G., Yeo, I., Walker, S., Devey, C., et. al. (2020). Hydrothermal Activity and Seismicity at Teahitia Seamount: Reactivation of the Society Islands Hotspot? Front. Mar. Sci., 7 :73, doi: 10.3389/fmars.2020.00073.

Goffredi, S., Tilic, E., Mullin, S., Dawson, K., Keller, A., Lee, R., et. al. (2020). Methanotrophic Bacterial Symbionts Fuel Dense Populations of Deep-sea Feather Duster Worms (Sabellida, Annelida) and Extend the Spatial Influence of Methane Seepage. Science Advances, 6, eaay8562, doi: 10.1126/sciadv.aay8562.

Grandy, J., Onat, B., Tunnicliffe, V., Butterfield, D., and Pawliszyn, J. (2020). Unique Solid Phase Microextraction Sampler Reveals Distinctive Biogeochemical Profiles among Various Deep-sea Hydrothermal Vents. Sci Rep, 10, 1360, doi: 10.1038/s41598-020-58418-4.

Hananto, N., Leclerc, F., Li, L., Etchebes, M., Carton, H., Tapponnier, P., et. al. (2020). Tsunami Earthquakes: Vertical Pop-up Expulsion at the Forefront of Subduction Megathrust. Earth and Planetary Science Letters, Vol. 538, doi: 10.1016/j.epsl.2020.116197.

Hatch, A., Liew, H., Hourdez, S., and G. Rouse. (2020). Hungry Scale Worms: Phylogenics of Peinaleopolynoe (Polynoidae, Annelida), with Four New Species. Zookeys, 932:27-74, doi: 10.3897/zookeys.932.48532.

Jia, Y., Richards, K., and Annamalai, H. (2020). The Impact of Vertical Resolution in Reducing Biases in Sea Surface Temperature in a Tropical Pacific Ocean Model. Ocean Modelling, Vol. 157, doi: 10.1016/j.ocemod.2020.101722.

Kornei, K. (2020). A Plate Boundary Emerges between India and Australia. EOS, 101, doi: 10.1029/2020EO144177.

Laxague, N., and Zappa, C. (2020). The Impact of Rain on Ocean Surface Waves and Currents. Geophysical Research Letters, 47 (7), doi: 10.1029/2020FL087287.

Lindsay, D., Hunt, J., McNeil, M., Beaman, R., and Vecchione, M. (2020). The First In Situ Observation of the Ram’s Horn Squid Spirula spirula Turns “Common Knowledge” Upside Down. Diversity, 12, 449, doi: 10.3390/d12120449.

Loranger, S., Barclay, D., and Buckingham, M. (2020). A New Measurement of the Deepest Depth of the Ocean. The Journal of the Acoustical Society of America, 149, 2443, doi: 10.1121/1.5146741.

Marques, O., Alford, M., Pinkel, R., MacKinnon, J., Klymak, J., Nash. J., et. al. (2020). Internal Tide Structure and Temporal Variability on the Reflective Continental Slope of Southeastern Tasmania. Journal of Physical Oceanography, doi: 10.1175/JPO-D-20-0044.1.

McCowin, M., Feehery, C., and G. Rouse. (2020). Spanning the Depths or Depth-restricted: Three New Species of Bathymodiolus (Bivalvia, Mytilidae) and a New Record for the Hydrothermal Vent Bathymodiolus thermophilus at Methane Seeps along the Costa Rica Margin. Deep Sea Research Part I: Oceanographic Research Papers, doi: 10.1016/j.dsr.2020.103322.

McDermott, J., Sylva, S., Ono, S., German, C. and Seewald, J. (2020). Abiotic Redox Reactions in Hydrothermal Mixing Zones: Decreased Energy Availability for the Subsurface Biosphere. PNAS, 117(34) 20453-20461, doi: 10.1073/pnas.2003108117.

Moriyasu, R., Evans, N., Bolster, K., Hardisty, D., and Moffett, J. (2020). The Distribution and Redox Speciation of Iodine in the Eastern Tropical North Pacific Ocean. Global Biogeochemical Cycles, 34(2), doi: 10.1029/2019GB006302.

Moulana, A., Anderson, R., Fortunato, C., and Huber, J. (2020). Selection is a Significant Driver of a Gene Gain and Loss in the Pangenome of the Bacterial Genus Sulfurovum in Geographically Distinct Deep-sea Hydrothermal Vents. mSystems, 5(2) e00673-19; doi: 10.1128/mSystems.00673-19.

Mustaffa, N., Ribas-Ribas, M., Banko-Kubis, H., and O. Wurl. (2020). Global reduction of in situ CO2 Transfer Velocity by Natural Surfactants in the Sea-surface Microlayer. Proceedings of the Royal Society A, Vol. 476, Issue 2234, doi: 10.1098/rspa.2019.0763.

Rahlff, J., Khodami, S., Voskuhl, L, Humphreys, M., Stolle, C., Martinez Arbizu, P, et. al. (2020). Short-term Responses to Ocean Acidification: Effects on Relative Abundance of Eukaryotic Plankton from the Tropical Timor Sea. bioRxiv, doi: 10.1101/2020.04.30.068601.

Rojas-Jimenez, K., Grossart, H-P., Cordes, E., and Cortes, J. (2020). Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific. Front. Microbiol., doi: 10.3389/fmicb.2020.575207.

Rojas-Jimenez, K., Grossart, H., Cordes, E., and Cortes, J. (2020). Fungal Communities in Sediments along a Depth Gradient in the Eastern Tropical Pacific. Front. Microbiol., 11:575207, doi: 10.3389/fmicb.2020.575207.

Russell, S., Pepper-Tunick, E., Svedberg, J., Byrne, A., Ruelas Castillo, J., Vollmers, C., et. al. (2020). Horizontal Transmission and Recombination Maintain Forever Young Bacterial Symbiont Genomes. PLOS Genetics, 16(8): e1008935, doi:10.1371/journal.pgen.1008935.

Sager, W. (2020). Giant Volcano Rewrites the Story of Seafloor Formation. Scientific American, 322 (5).

Savage, A., Waterhouse, A., and Kelly, S. (2020). Internal Tide Nonstationarity and Wave-mesoscale Interactions in the Tasman Sea. Journal of Physical Oceanography, 50(10), doi: 10.1175/JPO-D-19-0283.1.

Smith, J., Watling, L, Summers, N., Roark, E., Morgan, N., Lensing, S., et. al. (2020). Exploring for a Biogeographic Boundary along the Emperor Seamount Chain: A Multidisciplinary Approach. Oceanography, 33(1), doi: 10.5670/oceanog.2020.supplement.01.

Thomas, E., Anderson, R., Li, V., Rogan, J., and Huber, J. (2020). Diverse Viruses Have Restricted Biogeography in Deep-sea Hydrothermal Vent Fluids. bioRxiv, doi: 10.1101/2020.06.04.125666. [This article is a pre-print, and has not been certified by peer review].

Tokuda, A., Drazen, J., Gerringer, J., Popp, B., Grammatopoulou, E., and Mayor, D. (2020). Tropic Interactions of Megafauna in the Mariana and Kermadec Trenches Inferred from Stable Isotope Analysis. Deep Sea Research: Part 1 Oceanographic Research Papers, vol. 164, doi: 10.1016/j.dsr.2020.103360.

Walcutt, N., Knorlein, B., Cetinic, I., Ljubesic, Z., Bosak, S., Sgouros, T., et. al. (2020). Assessment of Holographic Microscopy for Quantifying Marine Particle Size and Concentration. Limnol. and Oceanogr.: Methods, doi: 10.1002/lom3.10379.

Wear, E., Carlson, C., and Church, M. (2020). Bacterioplankton Metabolism of Phytoplankton Lysates across a Cyclone-anticyclone Eddy Dipole Impacts the Cycling of Semi-labile Organic Matter in the Photic Zone. Limnol. and Ocean., 65 (7), doi: 10.1002/lno.11409.

Weston, J., Carrillo-Barragan, P., Linley, T., Reid, W., and Jamieson, A. (2020). New Species of Eurythenes from Hadal Depths of the Mariana Trench, Pacific Ocean (Crustacea: Amphipoda). ZooTaxa, 4748(1), doi: 10.11646/zootaxa.4748.1.9.

Wolf, M., Goodell, M., Dong, E., Dove, L., Zhang, C., Franco, L., et. al. (2020). A Link between the Ice Nucleation Activity and the Biogeochemistry of Seawater. Atmos. Chem. and Physics, 20(23), doi: 10.5194-acp-20-15341-2020.

Yamada, T., Prugel-Bennett, A., and B. Thornton. (2020). Learning Features from Georeferenced Seafloor Imagery with Location Guided Autoencoders. Journal of Field Robotics, doi: 10.1002/rob.21961.

Zappa, C., Brown, S., Laxague, N., Dhakal, T., Harris, R., Farber, A., and Subramaniam, A. (2020). Using Ship-deployed High-endurance Unmanned Aerial Vehicles for the Study of Ocean Surface and Atmospheric Boundary Layer Processes. Front. Mar. Sci. 6:777, doi: 10.3389/fmars.2019.00777.

Zhang, Y., Kieft, B., Hobson, B., Ryan, J., Barone, B., Preston, C., et. al. (2020). Autonomous Tracking and Sampling of the Deep Chlorophyll Maximum Layer in an Open-ocean Eddy by a Long Range Autonomous Underwater Vehicle. IEEE Journal of Oceanic Engineering, 45(4), doi: 10.1109/JOE.2019.2920217.

Student Dissertations from SOI-supported work:

Weber, S. (2020). Nitrogen fixation in the Monsoon Impacted Mekong River Plume, PhD Dissertation, University of Rostock.

2020 Scientific Presentations from SOI-Supported Work:

Ashford, O., Guan. S, Capone, D., Rigney, K. Rowley, K., Cordes, E., et. al. (2020). A Chemosynthetic Ecotone-’Chemotone’- Surrounds Deep Sea Methane Seeps. Oral Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Baker, I., Girguis, P., Michel, A., and Wankel, S. (2020). Characterizing the Role that Iron-oxidizing Bacteria Play in Iron and Carbon Biogeochemical Cycling at Deep-sea Methane Seeps. Poster Presentation, Gordon Research Conference on Geobiology, Galveston, TX, USA.

Barlett, D. (2020). Microbial Life at the Greatest Ocean Depths, Guest Lecture, Montana State University, Bozeman, Montana, USA.

Billings, G. and Johnson-Roberson, M. (2020). Visual Methods Towards Autonomous Underwater Manipulation, Oral Presentation, Underwater Intervention, New Orleans, LA, USA.

Blum, J., Drazen, J., Johnson, M., Popp, B., Motta, L, and Jamieson, A. (2020). Contrasting Hg Isotope Ratios from the Kermadec and Mariana Trenches, Oral Presentation, Goldschmidt Conference, Virtual.

Borges de Sousa, J. (2020). Exploring Dynamic Features of the Ocean with Coordinated Multi-domain Vehicle Systems. Oral Presentation, Underwater Intervention, New Orleans, LA, USA.

Borges de Sousa, J. (2020). Systems and Technologies for Multi-domain Synoptic Ocean Observation. Oral Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Borges de Sousa, J. (2020). Exploring the Pacific Subtropical Front with Coordinated Ship-robotic Surveys. Oceanology International, Virtual.

Brooke, B., Nichol, S., Huang, Z. (2020). Submerged Coasts on the Australian Continental Shelf & Offshore Islands. Oral Presentation, Submerged Paleoshorelines of the Southern Hemisphere Webinar, Virtual.

Cordes, E. (2020). Exploration of Hydrocarbon Seep Ecosystems and their Ties to the Deep Ocean and the Blue Economy, Oral Presentation, NOAA Seminar Series, Virtual.

Cordes, E. (2020). Exploration to Inform Management of the Blue Economy and to Protect Hydrocarbon Seep Ecosystems, Oral Presentation, iAtlantic Webinar Series, Virtual.

Cordes, E. (2020). Deep-sea Exploration for Research, Assessment, and Management. Invited Lecture, University of Rhode Island, Narragansett, RI, USA.

Daniels, J., Khan, A., Lord, J., Katija, K., Barry, J. (2020). Characterizing Animal-fluid Interactions in the Deep Sea Benthos using Combined DeepPIV and Respiration Measurements. Oral Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Ganguly, U. and France, S. (2020). Role of Depth and Substrate in the Evolution of Sea Pens (Pennatulacea, Octocorallia): a Phylogenic Study. Poster Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Gerringer, M., Yancey, P., Tikhonova, O., Vavvlov, N., Zgoda, V. and Davydov, D. (2020). Evolving Pressure-tolerance in Enzymes of Abyssal and Hadal Fishes. Oral Presentation, Deep-Sea Biology Meeting, Virtual.

Gerringer, M., Yancey, P., Tikhonova, O., Vavvlov, N., Zgoda, V. and Davydov, D. (2020). Evolving Pressure-tolerance in Enzymes of Abyssal and Hadal Fishes. Oral Presentation, Society of Integrative and Comparative Biology, Austin, TX, USA.

Goffredi, S. (2020). Extreme Alliances: Relationships between Deep-sea Animals and Bacteria. Southern California Academy of Sciences Spotlight Speaker Series, Virtual.

Goffredi, S. (2020). Establishing Interactions in a Dynamic Environment, Keynote Speaker, University of Vienna, Virtual.

Huber, J. (2020). Part 1: Microbes, Fluids, and Rocks. Oral Presentation, iBiology Research Talks, Virtual.

Karolewski, J., Oldham, V., Michel, A., Hansel, C., and Wankel, S. (2020). Manganese and Iron Support Anaerobic Oxidation of Methane at Cold Seeps, Poster Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Katija, K. (2020). Novel Imaging Tools to Illuminate Life in the Deep Sea. Invited Lecture, University of Washington, Virtual.

Katija, K. (2020). Novel Imaging Tools to Illuminate Life in the Deep Sea. Invited Lecture, Moravian College, Virtual.

Katija, K. (2020). Technological Challenges and Potential Solutions for Exploring the Ocean’s Midwaters, Invited Lecture, University of Washington, Seattle, WA, USA.

Katija, K. (2020). New Laser-imaging Technology (DeepPIV) Informs Ecomechanics of Deep Sea, Giant Larvaceans. Invited Lecture, Friday Harbor Laboratories, Virtual.

Katija, K. (2020). New Laser-imaging Technology (DeepPIV) Informs Ecomechanics of Deep Sea, Giant Larvaceans. Invited Lecture, Western Washington University, Bellingham, WA, USA.

Katija, K. (2020). Searching for Inspiration in the Deep Sea. Invited Lecture, Moore Foundation, Virtual.

Katija, K. (2020). New Laser-Imaging Technology (DeepPIV) Informs Ecomechanics of Deep Sea Animals. Panelist, Advances in Oceanographic Research and Technology Development at Sea Panel, IEEE Global Oceans, Virtual.

Katija, K. (2020). Technologies for Studying Biological Phenomena in the Deep Sea. Panelist, Exploring and Mapping Unseen Worlds Panel, Smart Oceans, Virtual.

Katija, K. (2020). Developing Technologies to Discover Life in the Ocean’s Midwaters. Panelist, United States Frontiers of Engineering Symposium, National Academy of Engineering, Virtual.

Katija, K. (2020). Searching for Life in the Deep Sea. Panelist, Joy Panel, PlayFest, Virtual.

Katija, K. (2020). Searching for Inspiration in the Deep Sea. Panelist, Eyes in the Sky, Eyes in the Seas Panel, Tektite 2020: Women of Sea and Space, Virtual.

Katija, K. (2020). Searching for Bioinspiration (with a LOT of Friends) in the Ocean’s Midwaters. Panelist, Exploration Technology Panel, Ocean’s Week: California Academy’s Breakfast Club, Virtual.

Katija, K. (2020). National Science Foundation’s Frontiers of Ocean Sciences Symposium, Panelist, National Science Foundation, Virtual.

McCulloch, M. (2020). Great Southern Science, National Science Week, Perth, AUS.

Michel, A., Johnson, A., Fauria, K., Preston, V., Nicholson, D., Hoer, D., et. al. (2020). From the Seafloor to the Surface: In situ Chemical Analysis of Rising Bubbles along the Cascadia Margin, Poster Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Negrete-Aranda, R. (2020). Modern Perspectives on Marine Heat Flow Measurement and Interpretation: A Look at the Past, Present, and Future Work of CICESE’s Heat Flow Team. Oral Presentation, CICESE Weekly Seminar Series, Virtual.

Orphan, V. (2020). Extreme Microorganisms: Living at the Energetic Edge. Oral Presentation, CIFAR Earth 4D Symposia, Virtual.

Pereira, O., Le, J., Gonzalez, J., Ashford, O., Cordes, E., Orphan, V., et. al. (2020). Ecotones at Methane Seeps: Understanding the Seepage Sphere of Trophic Influence for Carbonate Macrofauna, Poster Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Rahlff, J., Khodami, S., Voskuhl, L., Humphreys, M., Stolle, C., Arbizu, P., et. al. (2020). Impact of Ocean Acidification on Microbial Eukaryotes from the Timor Sea. Oral Presentation, Annual Meeting of Microbiologists, Leipzig, Germany.

Richards, K., Natarov, A., Jia, Y. (2020). Enhanced Turbulent Mixing in the Equatorial Thermocline. Oral Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Speth, D. (2020). Comparative Metagenomics of the Pescadero Basin and Guaymas Basin Hydrothermal Vent Fields & Broader Applications of Environmental DNA Sequencing in Biology. Oral Presentation, Caltech Geological and Planetary Sciences Geoclub Seminar, Pasadena, CA, USA.

Speth, D. (2020). Genomes are Everywhere, but What to Make of Them? A 2-Part Story of Mud and Matrix Wrangling. Oral Presentation, Revelling on Microbial Processes Seminar, Virtual.

Speth, D. (2020). How does Life Conquer, and Thrive in, Extreme Environments? Oral Presentation, CIFAR Earth 4D Trainee Day, Virtual.

Speth, D. (2020). Comparative Metagenomics of the Microbial Community at Pescadero Basin: A Recently Discovered Hydrothermal Vent Field in the Gulf of California. Poster Presentation, Gordon Research Conference on Geobiology, Galveston, TX, USA.

Tokuda, A., Gerringer, M., Popp, B., Wallsgrove, N., Grammatopoulou, E., Mayor, D., and Drazen, J. (2020). Food Web Structure in the Mariana and Kermadec Trenches from Stable Isotope Analysis. Poster Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Vega-Ramirez, L., Spelz, R., Contreras, J., Caress, D., Clague, D., and Paduan, J. (2020). A New Method for Fault-scarp Detection Using Linear Discriminant Analysis (LDA) in High-resolution Bathymetry Data from the Alarcón Rise and Pescadero Basin, Gulf of California, Oral Presentation, AGU Fall Meeting, Virtual.

Vega-Ramirez, L., Spelz, R., Negrete-Aranda, R., Neumann, F., Peña-Domínguez, J., Contreras, J., et. al. (2020). A New Method for Fault-scarp Detection Using Linear Discriminant Analysis (LDA) in High-resolution Bathymetry Data from the Alarcón Rise and Pescadero Basin, Gulf of California, Annual Meeting of Mexican Geophysical Union, Guadalajara, Jalisco

Watling, L., Baco-Taylor, A., Bingo, S., Carter, G., Dulai, H., France, S., et. al. (2020). Finding Biogeographic Boundaries in the Deep Sea: Alaska, Hawaii, and the Emperor Seamount Chain. Oral Presentation, Ocean Sciences Meeting, San Diego, CA, USA.

Wilson, N. (2020). Exploring the Deep-sea Canyons off Ningaloo. Invited Lecture, Royal Society of Western Australia Symposium, Perth, AUS.